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    20 March 2011, Volume 17 Issue 1
    Study of Earth Observation for Disaster Reduction  in Wenchuan and Yushu Earthquakes
    GUO Hua-dong, LIU Liang-yun, FAN Xiang-tao, LI Xin-wu
    2011, 17(1):  1-12. 
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    Wenchuan and Yushu earthquakes caused heavy casualties and property losses. Right after the events, earth observation techniques were applied to disaster monitoring and assessment. This paper introduces three typical results of these two earthquakes. done by the Center for Earth Observation and Digital Earth (CEODE), Chinese Academy of Sciences (CAS). Firstly, optical earth observation techniques were used in deriving locations, spatial distribution and intensities of three important secondary geological disasters including barrier lakes, damaged transportation and collapses/landslides/debris flows. Secondly, Multi-mode Synthetic Aperture Radar (SAR) techniques were used to analyze the regional geological structures and lithologic distribution characteristics, and then obtain sizes and spatial distribution of coseismic deformation fields in heavily hit areas during the Yushu earthquake. Finally, 3D software system for disaster simulation and assessment was developed which provided accurate and effective ways for decision-making of emergency rescues and disaster relief.

    Clostridium sp. Controlled Morphology of Mg-bearing calcite and its Implication for Possible Mechanism
    LI Fu-chun, MA Heng, SU Ning, WANG Jin-ping, LIU Ming-yan, WANG Jun, TENG Fei 
    2011, 17(1):  13-20. 
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    In  this study, culture experiments of carbonate precipitation using Lagoa Vermelha medium with 4:1 molar Mg/Ca ratio within 55 days were made under  the mediation of Clostridium sp.  (SN-1)  from Qinghai Lake sediment. At  the same  time, aseptic experiments were carried as control. The morphologies of precipitated carbonates at different  incubation  times were observed by using scanning electron microscopy, and mineral species were determined by X-ray diffraction. The results showed that (1) SN-1 helped promote the formation of Mg-bearing calcites with special shapes, but only irregular carbonate minerals were formed in the aseptic experiments, and (2) specifically shaped Mg-bearing calcite might nucleate and grow on the cell surfaces of bacteria, and  then evolve  from rod-like  to dumbbell-like, cauliflower-like and spherulite shapes. The authors suggest  that  this  is because more negative ionic groups concentrated on the polar ends than on the middle parts of rod-shaped bacteria, resulting in attracting more Ca2+ and Mg2+on both polar ends of bacterial cells. Ca2+ and Mg2+serve as “cation bridge”  to allure CO32-from the microenvironment. Consequently, rapid nucleation and growth on  the polar ends of  the cells  leads  to development of crystal bundles. When  the dumbbell-like calcitecontinues  to grow,  the  two  lobes of  the dumbbell would grow  into  two cauliflowers or hemispheres. The two hemispheres would merge together to form a spherulite, if both hemispheres could continue to grow.

    Attachment of Microbes on Mineral Surface in Microbial Weathering and Its Significance
    LU Xian-cai,TU Bo-wen,ZHU Ting-ting,LI Juan,WANG Zhao-hua,ZHOU Yue-fei,ZHAO Xin
    2011, 17(1):  21-28. 
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    Microbial weathering is one of the most important supergene processes, closely connected with global cycle of several
    elements and local environmental contamination, such as heavy metal contamination in mine districts. It is widely found that the
    attachment of microorganism on mineral surface can remarkably enhance the weathering of minerals. In this paper, the apparent
    weathering  rate and surface erosion are discussed based on  the brief summary of  the characteristics of surface attachment of
    microbes on minerals. The driving  force of  the attaching behavior and  its  influence  factors are preliminarily analyzed, and  the
    investigation on the microbe-mineral interface is emphasized. Transdisciplinary studies in molecular biology, surface mineralogy
    and micro-ecology are necessary  to disclose  the mechanism of microbial weathering at molecular  level, which  is helpful  for
    evaluating the geochemical significance of bio-weathering and the regulation ability of local environmental issues.

    Characteristics of mineralized focuses in several breast diseases
    WANG Chang-qiu,ZHAO Wen-wen,LU An-huai,XIONG Cui-e,MEI Fang,LIU Jian-ying 
    2011, 17(1):  29-38. 
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    Mineralization  characteristics  of mineralized  focuses  in malignant breast  tumor, benign breast  tumor, breast
    hyperplasia and mastitis frequently accompanied by calcification were investigated using optical microscope, environmental scan
    electron microscope  (ESEM) and micro-FTIR  (Fourier  transform  infrared spectroscopy). The results  indicate  that morphology of
    mineralization in different types of breast diseases are quite different. Collagen fibers and epithelial cells are closely related to the
    mineralization. The calcification is incident to breast invasive carcinoma and breast carcinoma in situ on the old necroses in ducts.
    Many calcified nano-bodies resembling psammoma body are formed on the collagen fibers in breast fibroadnoma. The mineralized
    focuses with fibrous texture and sheaf structure occur between the collagen fibers in breast hyperplasia, on which many calcified
    nano-balls are deposited. EDAX (energy dispersive X-ray analysis) results show that there may exist other calcium mineral (such
    as calcium oxalate) deposition than calcium phosphates in breast hyperplasia. The calcified focuses with thick fibrous texture have
    no special occurring positions in tissue of fat necrosis.

    Natural rutile-involved photocatalytic process assisted by microorganism
    LI Yan, LU An-huai 
    2011, 17(1):  39-45. 
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    A novel  interactive manner between minerals and microorganisms was proposed  in  this study,  i.e. microorganisms
    participate in the semiconducting mineral photocatalytic process via a bioelectrochemical reaction. The experimental results showed
    that in the interactive system including simulated sunlight, “electricigens” and natural rutile, the photocatalysis of natural rutile
    improved  the cathodic reaction kinetics, promoted  the electron  transfer efficiency and elevated  the electron energy of  the end of
    the microbial electron transfer chain. The synergistic interaction between microorganism and semiconducting minerals enhanced
    the  reduction efficiency of pollutants such as Cr(Ⅵ). The proposed  interactive pathway would be expected as an alternative
    effective technology for future wastewater treatment.

    Hydrous amorphous calcium carbonate: A biomimetic mineralization study
    GUAN Ye-bin, YAO Qi-zhi, ZHOU Gen-tao 
    2011, 17(1):  46-52. 
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    A common route  to  form biogenic minerals during biomineralization  is  that  the  initial deposit of  transient amorphous
    precursor phases and subsequent transformation into one of more stable crystalline phases. In terms of biogenic calcium carbonate
    minerals, amorphous precursor phase is generally considered to be formed under the joint regulation of biological macromolecules
    and  inorganic  ions.  In  this work, amorphous calcium carbonate  (ACC) was synthesized  in  the presence of citrate anions by a
    biomimetic mineralization process. Structure and morphology of the synthesized ACC and the subsequently products from the ACC
    transformed were characterized using a wide range of techniques, including field emission scanning electron microscopy (FESEM),
    X-ray diffraction (XRD), Fourier infrared spectroscopy (IR) and thermal gravity analysis-differential thermal analysis (TG-DTA).
    The results showed that the multi-carbonate anions could induce the formation of ACC which had a similar composition to biogenic
    hydrous ACC. Therefore, our results suggest that some biomineralization-associated acidic biomacromolecules canalso induce the
    formation of biogenic ACC and transiently stabilize it.

    The interaction between uranium and yeast cell surface
    LIU Ming-xue,ZHANG Dong,KANG Hou-jun,ZHANG Wei,LI Ye,PANG Xiao-feng,DONG
    2011, 17(1):  53-58. 
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    The yeast (Saccaromyces cerevisiae) absorption of uranium was studied by using Scanning Electron Microscope (SEM),
    Fourier Transform  Infrared Spectrometry  (FTIR) and Energy Dispersive X-ray Spectroscopy  (EDXS). The SEM  results showed 
    that yeast cell surface was covered with uranium crystal and the quantity of crystal increased with concentration of uranium and
    the interaction time. The surface morphology of yeast changed greatly with incubation time. EDXS analysis showed that the crystal
    of uranium was formed via adsorption on the surface of S. cerevisiae. FTIR results revealed that the peak attributed to υs(O-H) of
    yeast cell surface shifted about 29 cm-1 to lower wavenumbers. Both peaks of υ s(C-OH) and υs(-PO2-) shifted about 21 cm-1
     to lower wavenumbers, and the band attributed  toυ C=O of the carboxyl group almost disappeared. The formed crystal  is considered
    to be autunite according to the FTIR characteristic absorption band. These results indicated that the UO22+ can be stabilized via
    adsorption by S. cerevisiae

    Study on the ferric reduction microoganism nju-T1 isolated from Shizishan tailings, Tongling, Anhui Province
    XING Hui, ZHAO Ting-ting, XU Ze-an, GUAN Si-qi, LU Xian-cai, LU Jian-jun, WANG
    2011, 17(1):  59-65. 
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    A new iron reduction strain, named nju-T1, was isolated from acid mine drainage (AMD) and surface tailings samples
    from Yangchongshan  tailings  zone, Shizishan, Tongling, Anhui province, with FeTo  selective medium and overlay culture
    technology. The morphological, physiological and biochemical research and phylogenetic analysis based on  the 16S rRNA gene
    sequence showed that the strain belongs to  Acidithiobacillus. It was found that nju-T1 could reduce Fe3+ under aerobic conditions
    with plate and  liquid cultural  tests. The pH range  for growth was pH 2.0-6.0, with optimum growth at pH 4.5, optimum growth
    temperature at 30 ℃ and optimum ferric iron concentration at 5 mmol/L. It was inferred that the reduction sites may be located on
    the cell outer membrane. AMD and tailings were controlled by the dynamic balance between the microbial functional groups and
    surroundings. The nju-T1 reduced ferric to ferrous, which provided initial energy to ferrous-oxidizing bacteria and maintained the
    Fe recycle and stability of acid mine environment. The research on mechanism of ferric reduction with nju-T1 not only broadens
    the knowledge about  ferric  reduction bacteria mainly growing under  the anaerobic condition, but also has great significance  in understanding the formation of acid mine environment, its development mechanism and its further environmental treatment.

    Biomimetic formation of nanomagnetite chain: Implication for magnetosome mineralization
    QU Xiao-fei, YAO Qi-zhi, ZHOU Gen-tao 
    2011, 17(1):  66-75. 
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     Oriented chains of magnetite (Fe3O4) nanoparticles, similar to the magnetosome chains in magnetotactic bacteria (MTB),
    have been synthesized by using akaganeite  (β-FeOOH) and  ferrous  ions as  iron species  through a biomimetic method without
    protein or biomolecule. A detailed study by means of XRD, Micro-Raman spectrometer, TEM, SEM and HRTEM shows that the
    oriented chain  is self-assembled by  roughly cuboidal magnetite crystals, and  these cuboidal nanoparticles are connected,  face
    to  face, with  {100} or  {111}  facets. Based on  the  intrinsic dipolar structure, a magnetic dipole-dipole  interaction mechanism  is
    proposed for formation of magnetite chains. Our results suggest that in magnetotactic bacteria, except for the biologic factors, the
    dipolar  interaction among magnetosomes may be a potential candidate  for  the organization of magnetosomes  into  the chains.  It
    appears that biological and crystallochemical factors cooperate in the magnetosome mineralization in magnetotactic bacteria.

    Organic matrix-mineral interaction during cell wall  silicification in diatoms
    SHI Jia-yuan, YAO Qi-zhi, ZHOU Gen-tao 
    2011, 17(1):  76-85. 
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    Biosilica, more specifically hydrated amorphous silica, often referred to as opal, is the second most abundant mineral
    type  formed by organisms, with only  the carbonate minerals exceeding  it  in abundance and distribution. As  the predominant
    contributor  to biosilica  in  the oceans, diatoms are known  for  the  intricate geometries and spectacular patterns of  their silica-
    based cell walls. Biochemical studies demonstrate that diatom biosilica is a composite material containing several general organic
    components in addition to inorganic silica, such as polysaccharides, long-chain polyamines and zwitterionic proteins. Functional
    studies on these organic components indicate that they play a crucial role in guiding silica precipitation as well as in the formation
    of species-specific nanopatterns. This article gives an overview of current knowledge on the function of above-mentioned organic
    and biological molecules  in biosilicification. Moreover, some studies of biomimetic mineralization using model organic additives
    and in vitro experiments using molecules extracted from organisms are also involved. An insight into the silicification mechanisms
    in diatoms will link the global cycles for Si and C mechanistically, whereas identification and classification of the components in
    diatoms may assist us in deeper understanding of material sources of petroleum and the evolutionary development of diatoms.

    The effect of gypsum on carbon sequestration of organic matter in anaerobic decomposition
    HE Guang-ya,CHEN Tian-hu,LI Shao-jie,ZhANG Nan,GUI Xian-yang,YAO Dun-fan,LIU C
    2011, 17(1):  86-92. 
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    This paper  investigated  the affect of gypsum on methane emission and organic matter mineralization  in anaerobic
    biochemical system by using beef extract peptone as  the nutrient source. To explore  the effect and mechanism of gypsum on
    suppressing the activity of methane-producing bacteria (MPB), three kinds of chemical and physical indexes were tested: 1) TOC,
    TIC, SO42-, sulfide and pH values of the aqueous phase; 2) volume of CO2, CH4 and H2S emissions in the gas phase, and 3) SEM,
    EDS and XRD analyses of the solid phase. Our results showed that addition of gypsum could effectively reduce methane emission
    by more than 40 %. However, no apparent impact on the release of CO2 was observed during this process. Furthermore, the content
    of carbonate minerals in solid phase increased dramatically compared with the control group. These data further suggested that the
    major role of gypsum in this anaerobic system is represented in the following aspects: 1) the continuous dissolution of gypsum, one
    of the slightly soluble minerals, played an important role in controlled release of SO42-during its sustained reduction; 2) sulfate-reducing bacteria  (SRB)   were promoted  to be  the dominant microorganism under  the conditions of stable SO42-concentration and sufficient electron acceptors generated by slow dissolution of gypsum, and its competition of substrates and electrons further suppressed the methane production of MPB; 3) the consumption of organic carbon by SRB accelerated mineralization of organic matter, by which the carbonate generated could combine with Ca2+ in gypsum to form CaCO3. In this way, gypsum plays a crucial role in carbon sequestration by efficiently improving the rate of organic carbon mineralization.

    Environmental effects of heavy metal elements release in Yangshanchong tailing pool, Shizishan, Tongling, Anhui Province
    WANG Shao-hua,YANG Jie,LIU Su-ming,XU Zhao-wen,LU Xian-cai,Wang Bin,WANG H
    2011, 17(1):  93-100. 
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     The tailing pool in Yangshanchong, Shizishan copper mine of Anhui Province was constructed in 1966 and deactivated
    in 1991. This paper studies  the geochemical distribution of heavy metals of  the  tailing pool and  its surroundings. The samples
    were collected from three different locations: inside the tailing pool, farmland near the pool and farmland far away from the pool.
    Using AFS and ICP-MS the As, Hg, Cu, Zn, Pb etc. contents in soil,water and plants of these three locations are measured, the
    enrichment degrees of heavy metals are identified, and the distribution features of heavy metals are discussed. The results show
    that  there  is a difference  in enrichment degrees  for different elements. The  further  the distance  to  the  tailing pool,  the  lower  the
    heavy metal contents.

    Response of microbial community to sunlight catalysis of semiconductor minerals in red soil
    ZENG Cui-ping, LU An-huai, LI Yan, WU Jing, WANG Xin, DING Hong-rui, YAN Yun-hua
    2011, 17(1):  101-106. 
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    The natural  red soil was used  in  this study as a  research object, and  the  influence of semiconductor photocatalysis
    of  iron-bearing minerals on microbial community was analyzed. Using  the polymerase chain  reaction/degeneration gradient gel
    electrophoresis  (PCR-DGGE),  the microbial community  from  the original  red soil samples under different  light conditions was
    investigated after being disposed with exogenous electrons supplement. Principal component analysis  (PCA) of DGGE banding
    patterns indicated that the difference of the microbial community structure in two soil samples was due to different original light
    environments.  In  the  red soil with strong  light, no significant change of  the microorganism community structure was observed
    by processing with exogenous electrons; while in the original environment with weak light, the structure of microbial community
    was significantly affected by  the exogenous electrons. The different response of microbial community structure  to  the exogenous
    electrons may be attributed to the photoinduced electrons generated by the semiconducting mineral photocatalysis in the primitive
    strong  irradiation environment, which continued  to affect  the surrounding microbial communities; while photoinduced electrons
    were inadequate in the weak irradiation environment.

    Effect of potasium-bearing mineral powder on the exo-polysaccharides secreted by Bacillus mucilaginosus
    HU Xing, LIAN Bin, YU Jian-ping, HU Jie
    2011, 17(1):  107-111. 
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    Under different conditions, effects of mineral powder containing potassium on  the exo-polysaccharides  (EPS) secreted
    by Bacillus mucilaginosus were studied  to  further explain  the reciprocity between bacteria and potassium-baring minerals. In  the
    research, B. mucilaginosus was cultured  in  four kinds of media  to analyze and compare  their EPS production. Results showed  that
    bacteria secreted the highest output of both proteins and EPS in the culture with potassium-bearing minerals, but without potassium
    ion. While  in  the medium with potassium  ion,  the yielded EPS were  lower. However,  in  the medium without potassium beaing
    mineral powder and with or without potassium  ion,  the production of both proteins and EPS was proved  to be  the  lowest. List of
    monosaccharide components of EPS secreted by B. mucilaginosus varied obviously in relation with different culture conditions. The
    results demonstrated that extracellular secretion of the bacteria is closely related to the mechanism of potassium releasing.

    The formation of calcium carbonate particles induced by bacteria
    LI Hui, LIAN Bin, GONG Guo-hong, DU Kai-he 
    2011, 17(1):  112-117. 
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    In order to study whether Bacillus mucilaginosus can promote the formation of calcium carbonate or not under certain
    conditions, this research adopted two commonly used basic media of Bacillus mucilaginosus. The one is the nitrogen medium, and
    the other  is  the nitrogen-free medium. The apatite mineral was  the sole source of calcium, and  the B. mucilaginosus was grown
    in different media  to synthesis calcium carbonate. Scanning electron microscopy  (SEM), energy dispersive spectrometer  (EDS)
    quantitative analysis, and X-ray diffraction  (XRD) analysis were used  to observe and study  the crystal structure and chemical
    composition of  the  formed calcium carbonate. The  results showed  that B. mucilaginosus can accelerate  formation of calcium
    carbonate. The crystals, calcium carbonate particles  formed  in  the nitrogen medium containing apatite powders were more  than
    those in the nitrogen-free medium containing apatite powders. Meanwhile, the columnar calcium carbonate crystals were observed
    in  the nitrogen medium containing apatite powders. The mechanism  for B. mucilaginosus  to promote  formation of calcium
    carbonate might be  the secretion of carbonic anhydrase  (CA) and dissolved CO2  in  the process of apatite weathering and strong
    absorption features of bacteria.

    The crystal structure and photocatalytic activity of natural rutile modified by heat treatment…
    WU Jing, QIN Shan, LUO Ze-min, ZHUANG Wei, ZENG Cui-ping, LU An-huai 
    2011, 17(1):  118-124. 
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    The micro-structure and photocatalytic activity of natural  rutile, which was heated and annealed under hydrogen
    atmosphere, was studied here. Several conventional mineralogical  test methods were used, such as X-ray diffraction  (XRD),
    environmental scanning electron microscopy  (ESEM), UV-vis diffusive  reflectance absorption spectral analysis and structural
    refinement using GSAS software with Rietveld method. The natural rutile samples used in this study are found in a metamorphic
    deposit and collected from Shanxi province, China. The experimental results indicate that V, Fe and other impurities exist in the
    crystal  lattice of natural  rutile as  isomorphous substitution  for Ti  ions, which causes distortion of crystal  lattice and effectively
    enhances  the photocatalytic activity of  the specimens. As  the  temperature  increased, parts of  the  isomorphous substituted  ferric
    ions were gradually reduced to divalent and elemental iron. On one hand, the unit cell parameters of rutile decreased because of
    escaping of ions from the lattice, which have larger ionic radii than Ti4+ion. On the other hand, the unit cell parameters would be
    increased because of thermal expansion caused by the heat treatment. Therefore, no significant change in the unit cell parameters
    was observed. At the same time, the visible light response abilities of heated rutile samples were largely improved with increasing
    temperature. Compared  to  the original  sample RZM,  the  light absorption  intensity of  sample, which was  subjected  to heat
    treatment at 900℃, was enlarged by 147.2 % at 600 nm. Rietveld refinements suggested that a small amount of simple substance
    iron appeared when the heating temperature reached 800 ℃ and 900 ℃. Iron is a metallic conductor and has lower Fermi level.When  iron was  in contact with semiconductor rutile particles,  the photo-induced electrons could be  transferred rapidly,  thereby
    enhancing the visible light response ability of the system.

    Trace elements in quartz lattice and their implications for petrogenesis and mineralization
    CHEN Jian-feng, ZHANG Hui
    2011, 17(1):  125-135. 
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    Quartz  is widely distributed  in  the  igneous, sedimental and metamorphic  rocks, and hydrothermal ore deposits. As
    its specific stability  in composition and  texture, quartz does carry   much more petrogenetic and metallogenic  information  than
    other rock-forming minerals. Quartz, originated from different stages of magmatic-hydrothermal system and/or different geological
    settings, shows great differences  in  its  lattice  texture and distribution of  trace elements, because of  its different behavior  in  the
    history of geological processes. To interprate the factors affecting trace elements entering  quartz lattice and find out high-sensitive
    elements  in particular geological environments,  the  trace element distribution and  textural characteristics of quartz  lattice are
    investigated by use of micro-area in situ technique and cathodeluminescence. Therefore, the provenance of quartz formation can
    be traced, and then useful geological-geochemical information about the petrogenesis and metallization can be deduced. Moreover,
    as shown in this paper that there is a linear relationship between Al, Ti contents and the formation temperature of quartz. It might
    be extensively used as a tentative geothermometer.

    Genesis of the Tianzhushan intermediate-felsic rocks from the Dabie orogen and its geological significance
    LIU Lei, XU Xi-sheng
    2011, 17(1):  136-150. 
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    The Tianzhushan intrusive complex is one of the Late Yanshanian intermediate-felsic complexes in the Dabie orogenic
    belt, which was emplaced  in  two stages. The amphibole quartz monzonite of  the earlier stage has  larger SiO2 content variation
    ranging  from 59.83%  to 70.12%, with K2O+Na2O  from 7.02%  to 9.56%. The biotite monzogranite of  the  later stage has SiO2
    content variation ranging from 72.46% to 78.65%, with K2O+Na2O from 8.05% to 10.22%. They both belong to the calc-alkaline
    to alkali-calcic series. The  intermediate-felsic  rocks are enriched  in Rb, Th, K, Pb and U, and depleted  in Nb, Ta and Ti. The
    biotite monzogranite also has  remarkable Eu depletion which can be ascribed  to separation of plagioclase. Sr and Nd  isotope
    geochemical characteristics suggest  that  the  intermediate-felsic  rocks were derived  from  the old  lower crust which  is similar  in
    chemical composition  to  the metamorphic assemblage  in North Dabie. New LA-ICP-MS zircon U-Pb dating suggests  that  the
    crystallization age of  the Tianzhushan complex  is  (127±1) Ma~(131±1) Ma,  in agreement with  the ages  (120~135 Ma) of  the
    large-scale intrusive intermediate-felsic and mafic-ultramafic rocks in the region. The Tianzhushan granitoids were formed under
    extensional tectonic setting, providing an evidence that the Early Cretaceous large scale magmatism was generated by lithosphere
    delamination and asthenosphere upwelling. Subduction of  the paleo-Pacific plate  intensified Cretaceous extention of  the Dabieorogen which triggered delamination.